Table 4 SNPs genotyped in ADARB1 and ADARB2 by Sequenom
From: Case-control study of ADARB1 and ADARB2 gene variants in migraine
Gene | SNP ID | Forward, Reverse and Extension Primer Sequences | Position | SNP type | Allele Change | a CEU MAF |
|---|---|---|---|---|---|---|
ADARB1 | rs407133 | F: 5’ ACGTTGGATGCCTGCTCTGCAGTAATGAAC 3’ | 45396317 | Intron | C:G | G 0.46 |
R: 5’ ACGTTGGATGTCCTCCTCTCTTAACTCACG 3’ | ||||||
E: 5’ TCGGACCAATGCTGA 3’ | ||||||
rs422720 | F: 5’ ACGTTGGATGGGAAGCAGTACATGTTCATTG 3’ | 45403382 | Intron | A:C | C 0.36 | |
R: 5’ ACGTTGGATGGACTAATGCAGATGATCACC 3’ | ||||||
E: 5’ GGGTCAGTACATGTTCATTGTAAGAATT 3’ | ||||||
ADARB2 | rs3793733 | F: 5’ ACGTTGGATGCAACTCCATGTCAAAAGTGC 3’ | 1411326 | Missense | G:A | A 0.01 |
R: 5’ ACGTTGGATGATGCCAGGACTCAGGTGCTT 3’ | ||||||
E: 5’CAGGAAGCATATTGTCAACCTTCCTC 3’ | ||||||
rs7070629 | F: 5’ ACGTTGGATGGATGAAAAAAGGATGCCATAC 3’ | 1414938 | Intron | G:A | A 0.37 | |
R: 5’ ACGTTGGATGCCTGTGATGCAGCTTCTCCT 3’ | ||||||
E: 5’ ACCTTTGATGCAGCTTCTCCTGGCACA 3’ | ||||||
rs10903479 | F: 5’ ACGTTGGATGAGAACGCAATGCACTCTTCC 3’ | 1581881 | Intron | A:T | T 0.40 | |
R: 5’ ACGTTGGATGTCGGTTTTGGAGTCTAGAGG 3’ | ||||||
E: 5’ CCTCATTGTCACAGAGT 3’ | ||||||
rs7094094 | F: 5’ ACGTTGGATGTCTAGAAAATGCAGAAGGG 3’ | 1652840 | Intron | T:G | G 0.38 | |
R: 5’ ACGTTGGATGCTTGGGCTATACTTTTTGTG 3’ | ||||||
E: 5’CATTCAGTTGTTCTAATATTATATTGA 3’ | ||||||
rs10903520 | F: 5’ ACGTTGGATGTTACTCCTTAAGTGGAAGGG 3’ | 1672481 | Intron | G:A | A 0.39 | |
R: 5’ ACGTTGGATGACCATGATATCTACCCCTCC 3’ | ||||||
E: 5’ AAAGAAGCAGGCGTT 3’ | ||||||
rs884861 | F: 5’ ACGTTGGATGGAAAAACAGATAGACAAAGC 3’ | 1765662 | Intron | C:G | C 0.43 | |
R: 5’ ACGTTGGATGCCCTGGAATAACTTCAGGGT 3’ | ||||||
E: 5’ ACAGATAGACAAAGCAGAATATAT 3’ |