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Table 4 Functional enrichment results of PBMC RNA-seq data of the ictal vs. healthy comparison. DE list enrichment: overrepresentation of functional terms in the differentially expressed gene list. Ranked list enrichment: enrichment of genes associated with a certain pathway towards the top of the ranked whole data. GO: gene ontology, BP: biological process, CC: cellular component, MF molecular function. KEGG: Kyoto Encyclopedia of Genes and Genomes. Annotated: number of genes associated with the given term. R: Reactome database. Significant: number of statistically significant associated with the given term. Expected: expected number of genes associated with the given term in the DE gene list. Gene ratio: ratio of number of genes in the DE list that overlap with genes associated with the given term, and the number of genes in the DE list which overlap with genes associated with all terms in the Reactome database. Bg ratio: ratio of the number of genes associated with the given term, and the total number of genes associated with Reactome terms

From: Identification of disease- and headache-specific mediators and pathways in migraine using blood transcriptomic and metabolomic analysis

Ictal vs. healthy

ID

DE list enrichment

Annotated

Significant

Expected

p-value

GO:1901700 BP

response to oxygen-containing compound

1347

45

10.86

2.60E-14

GO:0070851 MF

growth factor receptor binding

105

7

0.83

0.000019

  

Gene ratio

Bg ratio

 

p-value

R-HSA-6783783

Interleukin-10 signaling

10/84

40/8821

 

2.60E-14

R-HSA-6785807

Interleukin-4 and Interleukin-13 signaling

11/84

98/8821

 

1.71E-09

R-HSA-179812

GRB2 events in EGFR signaling

3/84

11/8821

 

0.00013

 

Ranked list enrichment

Annotated

  

p-value

GO:0070098 BP

chemokine-mediated signaling pathway

67

  

2.60E-14

KEGG 4080

Neuroactive ligand-receptor interaction

157

  

1.86E-14

KEGG 4740

Olfactory transduction

63

  

0.000817