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Table 2 Functional enrichment results of PBMC RNA-seq data of the interictal vs. healthy comparison. DE list enrichment: overrepresentation of functional terms in the differentially expressed gene list. Ranked list enrichment: enrichment of genes associated with a certain pathway towards the top of the ranked whole data. GO: gene ontology, BP: biological process, CC: cellular component, MF molecular function. KEGG: Kyoto Encyclopedia of Genes and Genomes. Annotated: number of genes associated with the given term. R: Reactome database. Significant: number of statistically significant associated with the given term. Expected: expected number of genes associated with the given term in the DE gene list. Gene ratio: ratio of number of genes in the DE list that overlap with genes associated with the given term, and the number of genes in the DE list which overlap with genes associated with all terms in the Reactome database. Bg ratio: ratio of the number of genes associated with the given term, and the total number of genes associated with Reactome terms

From: Identification of disease- and headache-specific mediators and pathways in migraine using blood transcriptomic and metabolomic analysis

Interictal vs. healthy

ID

DE list enrichment

Annotated

Significant

Expected

p-value

GO:0006954 BP

inflammatory response

625

31

6.03

2.60E-14

GO:0005126 MF

cytokine receptor binding

210

14

1.89

6.10E-09

GO:0042379 MF

chemokine receptor binding

37

6

0.33

8.90E-07

  

GeneRatio

BgRatio

 

p-value

R-HSA-6783783

Interleukin-10 signaling

11/96

40/8821

 

2.60E-14

 

Ranked list enrichment

Annotated

  

p-value

GO:0022900 BP

electron transport chain

173

  

2.60E-14

GO:0005746 CC

mitochondrial respiratory chain

82

  

2.17E-05

GO:0016684 MF

oxidoreductase activity, acting on peroxide as acceptor

50

  

0.000016

KEGG 190

Oxidative phosphorylation

121

  

8.82E-06

KEGG 4080

Neuroactive ligand-receptor interaction

157

  

2.28E-05